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[干细胞与细胞生物学类] PDF电子书:Principles of Developmental Genetics   [复制链接]

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楼主
发表于 2010-11-30 10:56 |只看该作者 |倒序浏览 |打印
本帖最后由 细胞海洋 于 2010-11-30 12:27 编辑 4 O$ M9 z# f; O! w$ a* j
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Developmental Genetics, or What Can Genetics and Genomics Tell Us About Evolution, Development, Stem Cells, Human Birth Defects, and Disease?' Z7 S7 c4 o2 Y8 V7 O8 a( V
. s0 M/ x. T' s8 t9 [
The ability of researchers to answer experimental questions greatly depends* |: P8 A8 i: J
on the available technologies. New technologies lead to novel observations
( P) n. |/ p* s* l0 |5 Nand field-changing discoveries and influence the types of questions that can* L0 X) ^  D9 Q, L1 i
be asked. Today’s recently available technologies include sequencing and analyzing
9 V" j) S1 _" i0 p+ Q2 Xthe genomes of human and model organisms, genome-wide expression# X& c6 U1 t8 l1 o
profiling, and high-throughput genomic and genetic analyses. The information" S" W. l& S! M# g; Y, q; A- {
provided by these approaches is enabling us to begin to understand the! a1 T' v. h7 z; h+ H4 T( ?7 D( m
complexity of many biological processes through the elucidation of gene regulatory6 A! g: u0 |3 ?$ q5 Q
networks, signaling pathway networks, and epigenetic modifications.4 i8 s) X4 h, |8 \$ w
This book describes many lines of research that are being impacting by these  h" L$ Y8 X5 L, q6 B/ V' x6 P, ?; n
new technologies, including developmental genetics and the related fields of) s; @" ^2 o' l4 K
clinical genetics, birth defects research, stem cell biology, regenerative medicine,  O7 [% p! w0 R: N( J6 ^+ K4 t
and evolutionary biology.
! o6 L9 ?+ w! T4 qThe field of developmental genetics, or the study of how genes influence7 J, X: L1 a# y
the developmental processes of an organism, has been influenced by new technologies
" @: r( K. O2 v+ P' `; zand by interactions with other fields of study throughout its history.
& D6 m( K. \, e% Y1 KThe concept of a genetic basis of development began in “modern” times at the
/ G: A5 }2 W* ]4 O* s$ E* C6 F9 }intersection of descriptive embryology and cytology. Modern histological
8 R: x7 x% y( b: ztechniques were developed in the mid-19th century, largely by Wilhelm His, R  [2 [9 s* k) g3 Z* v1 Q/ F$ h" O
so that he could study cell division in the neural tube, which enabled visualization. Y3 C4 R( K, q  Z) C/ T
of the cell nucleus, chromosomes, and the discrete steps of mitosis.; U/ [. u( o, V1 _9 h  x+ K
Theodor Boveri cleverly applied these improved microscopic techniques to
, D, S: X3 j- ~; O" t9 Otransparent marine embryos to demonstrate that each parent contributes/ i/ `" c! J, e; n
equivalent groups of chromosomes to the zygote, and that each chromosome( _6 x6 W- \% |8 ?. N
is an independently inherited unit. Importantly, he noted that if an embryo7 L2 u; |% O; D4 q0 i0 {+ p
contains the incorrect number or improper combination of chromosomes, it5 K, y; U3 F7 Q8 S  [) [
develops abnormally.  _% d5 Y; H- E% g
However, many early embryologists rejected the idea that development is! ^, V! O9 j! S% X& @) Q
driven by prepackaged heritable particles because it seemed too similar to the
8 d( H# I! C% jidea of “preformation”: the concept that development is driven by predetermined
+ Z' [6 Z" `- k1 @factors or “forces” (sometimes described in rather mystical terms).
9 z. T/ ]; l: Z% A- i$ \$ r* BWilhelm Roux, an advocate of studying the embryo from a mechanistic point
  W( f; X4 L6 l* kof view, was a leader in the approach of manipulating the embryo with microsurgical
, ~/ N% {( E7 V1 g" H# T# |techniques to elucidate cause and effects between component parts
0 K( x3 i, k$ h! L3 l, V(experimental embryology). By using an animal model whose embryos were
& z+ U) s6 k8 e; Z" R1 blarge, developed external to the mother, could be surgically manipulated with
1 M! j+ p" n& `/ d$ B8 N3 Zsharpened forceps and cultured in simple salt media (i.e., amphibians), he
2 y& C8 m4 n. Q* y) Yrejected the role of predetermined factors and demonstrated the importance
/ r9 L8 I* A+ `) Mof external (epigenetic) influences and cell–cell interactions in regulating
- P- e, ~/ Q, s: g* j  @2 \developmental programs. Experimental embryologists further refined their
0 |1 F4 M9 \9 [2 wskills at dissecting small bits of tissue from the embryo, recombining them6 ?( o) o2 g, ^# h2 A, B6 |
with other tissues in culture or transplanting them to ectopic regions in the
- Y$ U4 w  x1 ]/ qembryo. This work led to the invention of tissue culture by Ross Harrison
( `/ I9 g& K' C5 ~and the discovery of tissue inductions by Hans Spemann.
  U- g+ r) Q; E8 r6 eWhile experimental embryology was thriving, T. H. Morgan founded the3 {: \) e4 P* e
field of Drosophila genetics. Also trained as an embryologist, Morgan was* Q4 K6 Z2 E. A: V
skeptical of Boveri’s idea of heritable packets, and directed his studies towards. L  |; W) X' h- F: ?
understanding the principles of inheritance. For several decades, the two fields( X7 V7 X& J2 s5 B- j: R" g- A
had little impact on one another. Interestingly, however, after a few decades of, ?  A/ U8 ]) v& X0 i( I, L
study of the fruit fly, Morgan’s work supported the idea of discrete intracellular% j/ \7 _& z4 t2 o" S0 m, V
particles that directed heritable traits, which he named “genes.” Nonetheless,* W! B9 d- l9 u4 i
the fields of experimental embryology and genetics remained fairly4 c3 k- q. F' X5 _$ f' a9 p
separate entities with distinct goals and points of view. Embryologists were& H, M5 a! K. f
elucidating the interactions that are important for the development of numerous
# y& N- r7 Y% ^, ?tissues and organs, whereas geneticists were focused on the fundamentals3 x: }0 a+ Y) ]6 m8 i5 e# s! u% o
of gene inheritance, regulation of expression, and discovering the genetic# j1 t; G" W2 A' ?7 _
code. Indeed, elucidating the genetic basis of vertebrate development was3 G8 P5 p( Y* }6 I
delayed until new technologies in molecular biology and cloning were devised.
( ~1 H2 G. W$ F% v& T# uFrom the field of bacterial and viral genetics came the techniques for cloning8 Z- U+ c/ S5 T: H! P
eukaryotic genes and constructing vectors for controlling expression. From/ H& p( u' g# Y5 e
the classical genetic studies in fly and nematode came the rationale for mutagenizing8 t6 d8 e+ I# L$ W1 z' q
the entire genome and screening for developmental abnormalities.
8 W# ~* g1 x3 @& w: kImportant regulatory genes were discovered in these invertebrates, and their
5 p: G* n: Z1 J2 H% _counterparts were discovered in many other animals by homology cloning
5 V3 z1 Y$ p/ j6 u( z; \9 ~approaches. Thus was born the modern field that we call developmental4 c  v- d7 {6 P% H
genetics.
4 |, }, I1 ?2 |7 ?An important advance in the past decade is the demonstration that genes; z+ y+ ?' k4 X5 ~7 K
that regulate developmental processes in invertebrate species have important+ }6 x  }( w- u3 L6 m' h" |
developmental functions in vertebrates. The wealth of information concerning: Y. z, b' F1 S- e/ S7 V# ?
the molecular genetic processes that regulate development in various animals
& J# ?2 o: ^/ {) Bdemonstrates that developmental programs and biological processes are highly% z$ \, V. E5 x& O' N( f, Z. M& P: M
conserved, albeit not identical, from yeast to human. Indeed, the Human1 _- X# E, p8 i0 r$ ^) s
Genome Project has made it possible to identify the homologues in humans
- y3 ]) V& S& a  _, zand demonstrate that many of these regulatory genes underlie human developmental) s, c9 v( |: {
disorders and aspects of adult diseases in which differentiation processes
1 P! }5 w2 f; K3 E, ego awry. Currently, researchers are studying the fundamentals of
2 F% ]/ S: a& E( R" e4 X1 [2 wdevelopmental processes in the appropriate animal model and screening
. s  `$ i1 \: }2 p4 {; h, j  Bhumans for mutations in the genes identified by the basic research to be likely  U& w+ a0 }5 X/ P  _$ t
causative candidates. Researchers are mutagenizing vertebrate animal models4 B0 w. I* `6 q) A4 V( B
and screening for mutants that resemble known human syndromes. This7 b- u3 A" X4 W  C$ {" B
cross-fertilization of fields is also impacting concepts in evolutionary biology,
; e! W8 S2 U( d, N. ]0 {xii PREFACE
" o# p) R' b9 q1 f7 d4 i7 b4 Z4 Yleading to a better understanding of “ancestral” species via gene expression
" h* v! r+ M& V/ U( u2 gprofiles, and paradigms in stem cell biology in which naı¨ve cells may be directed
0 M: E: J4 c- N  c: Ito “designer” lineages.
7 B- I% P. K- v1 GMost recently, there have been significant technological advances in* ]0 g2 Q# [$ O$ E
genetic, genomic, and protein expression analyses that are having a major
. H" _- X$ {5 E" \4 _$ uimpact on experimental approaches and analytic design. The intersection of
; W5 _& U1 B7 R3 C* z- edevelopmental biology with these technologies offers a new view of developmental. I9 l' x3 W3 a& d
genetics that is only beginning to be exploited. It is this new intersection7 e2 O& ^4 V+ x& P( g" X, f
at the onset of the genomic era that is the focus of this book. The book is7 k0 a5 U8 Q0 p, l! A! t8 q6 P
organized into sections focused on different aspects of developmental genetics.) X. R/ f% g$ ]0 d- B
Section I discusses the impact of new genetic and genomic technologies on
) M0 d7 _! F9 U3 e$ x. \, ldevelopment, stem cell biology, evolutionary biology, and understanding! |. ^5 |& q: e
human birth defects. Section II discusses several major events in early embryogenesis,
  J+ n, x8 v+ G/ M2 v5 }) Ifate determination, and patterning, including cellular determinants
  X' z4 T$ C% C' Q1 {7 q  z(Boveri revisited?), gene cascades regulating embryonic axis formation, signaling
( J& t: X. |- l$ a+ _, r3 Nmolecules and transcription factors that regulate pattern formation, and" L8 L; e3 }5 O7 H% k
the induction of the primary germ layers (ectoderm, mesoderm, and endoderm).5 Z4 J+ a/ ?! U% B, M1 |
Section III describes the reorganization of the embryo via different) n& A4 }' U8 j8 A8 }' k- r
types of morphogenetic and cellular movements that result in the foundation& }. H1 v  }1 Q0 r0 ?
of organ systems, and discusses the many signaling and adhesion molecules1 h- p: ]% S' b$ O6 Z* f7 W, j
that are involved in regulating these complex processes. The final three sections
4 i) a' ?, [+ t" x* i3 v9 yfocus on the signaling cascades and transcriptional pathways that regulate( K% R6 m4 I- P9 N; E# `
organogenesis in representative systems derived from the embryonic5 a; N; D  _& B/ A- j3 B7 K/ m
ectoderm, mesoderm, and endoderm. These chapters illustrate how embryonic# z  F3 A$ ^/ k  ?9 b% `
rudiments become organized into adult tissues, and how defects in these processes
* _$ g4 O$ |. y4 hcan result in congenital defects or disease. Each chapter demonstrates! G/ J: k& c! V, ?
the usefulness of studying model organisms and discusses how this information) U# B& t  f2 W$ s$ V6 L( S
applies to normal human development and clinical disorders. Several  n# }. d0 k% Z3 G) }
chapters also discuss the utility of stem cells to repair damaged organs and" |8 [4 X: J' e$ d
the application of developmental genetics to the manipulation of stem cells: B! K* D. [6 D+ a% ^0 e
for regenerative medicine.
, U1 u5 X$ ?3 \2 a7 r5 LThe goal of this book is to provide a resource for understanding the critical, v2 n7 T, \  ]& U' T& L9 ]
embryonic and prenatal developmental processes that are fundamental to( m3 c* ]1 i- G  S  d$ p) O8 k
the normal development of animals, including humans. It highlights new
7 e8 @: S6 R1 ~1 Btechnologies to be used, new questions to be answered, and the important
' y5 s  K# d. o, e$ Rroles that invertebrate and vertebrate animal models have had in elucidating) H  ^: K$ _9 ?, g  m' m
the genetic basis of human development. Developmental genetics has reemerged
, }6 v9 u/ [, x% ~, P& Sfrom its birth a century ago as a nexus of diverse fields that are using1 ]( Q8 q* i7 D: }$ l- {
the common language of gene sequence and function. This is influencing2 R' r* u- P/ Q
what questions are posed and how the answers are used. New technologies
( m. W9 l3 N9 M6 }are making it relatively easy to study gene expression and regulation at single
5 X2 p8 E2 `7 e9 n! z7 @2 n7 fcell, tissue, and embryonic levels. The conservation between the genomes
8 O9 E& `  d( @of species that are separated by vast evolutionary time encourages us to
# w( |) K: ]/ R8 w2 x2 f0 L; |more fully utilize animal models to gain important insights into the clinical+ Z2 X( C9 z/ n1 A0 y  n
relevance of the animal model data. It is our hope that this book will stimulate9 I1 h+ K* @" ~) r! F. j+ g- n1 M
even more cross-fertilization and interactions between evolutionary biology,' T2 ^1 u# d3 ?
developmental biology, stem cell biology, basic scientists, and clinical
3 }0 Y4 r0 y, Y3 O$ r6 a, fscientists.3 C1 v4 ~! [( s( ^% [; K4 M( u# b: D* Z
I wish to thank all of the authors for contributing such exciting and: E' ?. a, h# s) I. |% G+ w/ Q
excellent chapters, and Pat Gonzalez for keeping all of us on schedule.
3 K7 i' E: l- P9 I7 m) C# [# l1 K$ y$ T' S# A  U8 B) t
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